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Nabil-Fareed Alikhan

How zip up a folder of loose FASTQ files

tips1 min read

The problem is to find all fastq files, and submit each one, one by one as a job to be gzipped.

Local machine

Multicore version

You will need to have pigz installed.

Compute cluster - HPC

This really applies if you are working on a computing cluster (SLURM).

Multicore version

You will need to have pigz installed.

Do you have a better idea? At me on Twitter. @happy_khan