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Nabil-Fareed Alikhan

MicroBinfie Podcast, 51 SARSCOV2 Round-up 3 and updates from Denmark

microbinfie, podcast1 min read

We discuss the latest developments in SARS-CoV-2 genomics over the last 2 weeks with Mads Albertsen and the latest developments in Denmark. Denmark covid stats: www.covid19genomics.dk/statistics Tools and resources mentioned: https://outbreak.info/ https://virological.org/t/outbreak-info-sars-cov-2-mutation-situation- reports/629 https://gitlab.com/johan.bernal.morales/sarscov2 Publications mentioned: A Comparison of Performance for Different SARS-Cov-2 Sequencing Protocols https://www.biorxiv.org/content/10.1101/2021.03.01.433428v1 Before the Surge: Molecular Evidence of SARS-CoV-2 in New York City Prior to the First Report https://www.medrxiv.org/content/10.1101/2021.02.08.21251303v1 SARS- CoV-2 within-host diversity and transmission https://science.sciencema g.org/content/early/2021/03/09/science.abg0821 Info on masking SARSCOV2 sites: https://virological.org/t/issues-with-sars- cov-2-sequencing-data/473 https://github.com/W-L/ProblematicSites_SARS- CoV2/blob/master/subset_vcf/problematic_sites_sarsCov2.mask.vcf