Further Reading and Additional Resources

Posted on November 11, 2024

Here is some extra content for you to learn more about many of the topics we have covered here.

Next generation sequencing

• The chemistry of next-generation sequencing

Genome assembly

• Genome assembly and comparison using de Bruijn graphs
• Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing

Pathogen genomics

• Pathogen Genomics in Public Health
• Towards a genomics-informed, real-time, global pathogen surveillance system
• Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review
• Introduction to MLST as it applies to E. coli

Python tutorials

• W3 schools python tutorial
• UC Davis bioinformatics core introduction to Python
• Python for biologists
• Full spectrum bioinformatics - Introduction to bioinformatics via Python coding

Other tutorials

• Galaxy tutorials - Various tutorials from introduction to advanced analyses using the Galaxy portal.